Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC105895801Histone H2A-like. (129 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.892
rps27a
Ribosomal protein S27a.
   
 0.801
ENSCHAP00000037425
Tumor protein p53 binding protein, 1.
    
 0.753
ENSCHAP00000030857
annotation not available
    
 0.746
ENSCHAP00000030291
Ubiquitin B.
    
  0.712
ENSCHAP00000035355
ATM serine/threonine kinase.
    
 0.706
ENSCHAP00000025718
Glyoxylate reductase 1 homolog (Arabidopsis).
    
   0.690
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
    
  0.688
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
    
  0.688
ENSCHAP00000024514
WRN RecQ like helicase.
    
 0.679
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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