Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC105907873Cyclin-dependent kinase 5 activator 1-like. (313 aa)    
Predicted Functional Partners:
cdk5
Cyclin dependent kinase 5.
    
 0.958
ENSCHAP00000016808
Zinc finger, FYVE domain containing 9a.
      
 0.683
ENSCHAP00000057082
Astrotactin 1.
      
 0.672
ENSCHAP00000039357
Tumor protein p53.
    
  0.656
ENSCHAP00000039408
Tumor protein p53.
    
  0.656
ENSCHAP00000042143
annotation not available
    
  0.656
neurog1
Neurogenin 1.
   
  
 0.554
ENSCHAP00000053646
Neuropilin 1a.
     
  0.548
ENSCHAP00000003924
Tumor protein p63.
    
 0.507
ENSCHAP00000048664
Tumor protein p73.
    
 0.507
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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