STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arl6ip6ADP ribosylation factor like GTPase 6 interacting protein 6. (199 aa)    
Predicted Functional Partners:
ENSCHAP00000002698
HESX homeobox 1.
    
   0.601
ENSCHAP00000044126
Adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2.
    
   0.601
med29
Mediator complex subunit 29.
      
 0.535
rftn2
Raftlin family member 2.
      
 0.530
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.524
ENSCHAP00000009057
Family with sequence similarity 177 member A1.
      
 0.520
atp6v1a
ATPase H+ transporting V1 subunit A.
      
 0.516
LOC105888743
Phospholipase B-like 1.
      
 0.428
ENSCHAP00000047783
HemK methyltransferase family member 1.
      
 0.407
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.