STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004696Cryptochrome circadian regulator 4. (560 aa)    
Predicted Functional Partners:
timeless
Timeless circadian regulator.
    
 0.889
LOC105902405
Period circadian protein homolog 1-like.
   
 0.886
ENSCHAP00000019639
Period circadian clock 3.
   
 0.885
ENSCHAP00000029164
Period circadian clock 1b.
   
 0.883
ENSCHAP00000042921
Period circadian clock 2.
   
 0.868
ENSCHAP00000019894
Clock circadian regulator a.
    
 0.859
ENSCHAP00000003518
Neuronal PAS domain protein 2.
    
 0.847
ENSCHAP00000024051
Clock circadian regulator b.
    
 0.842
ENSCHAP00000001758
annotation not available
   
 0.823
LOC105895625
Aryl hydrocarbon receptor nuclear translocator-like protein 1.
   
 0.823
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.