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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004739annotation not available (346 aa)    
Predicted Functional Partners:
ENSCHAP00000006479
seryl-tRNA synthetase 1.
     
 0.932
sepsecs
Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase.
     
 0.932
ENSCHAP00000028478
seryl-tRNA synthetase 2, mitochondrial.
     
 0.930
ENSCHAP00000007509
Transmembrane protein 179B.
     
 0.805
ENSCHAP00000057586
Zgc:110591.
     
 0.805
sgpl1
Sphingosine-1-phosphate lyase 1.
     
 0.626
LOC105900485
Glutamate decarboxylase 1-like.
     
 0.626
ddc
Dopa decarboxylase.
     
 0.626
gad2
Glutamate decarboxylase 2.
     
 0.626
gad1
Glutamate decarboxylase 1.
     
 0.626
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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