STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srsf1Serine and arginine rich splicing factor 1. (248 aa)    
Predicted Functional Partners:
srsf7
Serine and arginine rich splicing factor 7.
   
0.998
ENSCHAP00000011153
Eukaryotic translation initiation factor 4A3.
  
 0.997
LOC105900893
Protein mago nashi homolog.
   
 0.996
srsf3
Serine and arginine rich splicing factor 3.
   
0.991
rbm8a
RNA binding motif protein 8A.
   
 0.989
ENSCHAP00000037117
annotation not available
   
 0.989
ENSCHAP00000026432
Transformer 2 alpha homolog.
   
 0.988
ENSCHAP00000030269
Transformer 2 beta homolog.
   
 0.988
srsf9
Serine and arginine rich splicing factor 9.
  
0.980
ENSCHAP00000006979
annotation not available
   
0.979
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.