STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105895812Histone H2A-like. (133 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.994
ENSCHAP00000007184
Lysine (K)-specific demethylase 6B, b.
    
 0.817
ENSCHAP00000032575
Lysine (K)-specific demethylase 6B, a.
    
 0.817
ENSCHAP00000047368
Lysine (K)-specific demethylase 6A.
    
 0.817
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.769
ENSCHAP00000030857
annotation not available
    
 0.760
rps27a
Ribosomal protein S27a.
   
  0.750
ENSCHAP00000030291
Ubiquitin B.
   
  0.738
ENSCHAP00000037425
Tumor protein p53 binding protein, 1.
    
 0.737
ENSCHAP00000035435
Polymerase (RNA) II (DNA directed) polypeptide C.
    
 0.731
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.