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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004899annotation not available (1991 aa)    
Predicted Functional Partners:
LOC105901090
E3 ubiquitin-protein ligase DTX3L-like.
 
 
 
 0.877
ENSCHAP00000053119
Zgc:66440.
 
 
 
 0.788
ENSCHAP00000014285
annotation not available
   
 
 0.703
ENSCHAP00000062558
Interferon induced with helicase C domain 1.
   
 
 0.703
ENSCHAP00000010605
Danio rerio ring finger protein 213a (rnf213a), mRNA.
  
 
 0.600
ENSCHAP00000032099
Danio rerio ring finger protein 213b (rnf213b), mRNA.
  
 
 0.600
LOC105908656
Poly [ADP-ribose] polymerase 9-like.
  
 
0.584
hdac11
Histone deacetylase 11.
   
 0.560
ENSCHAP00000004969
Ubiquitin specific peptidase 18.
   
 
 0.550
aifm1
Apoptosis inducing factor mitochondria associated 1.
  
 0.546
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.