Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004933U2 small nuclear RNA auxiliary factor 2a. (469 aa)    
Predicted Functional Partners:
ENSCHAP00000000197
U2 small nuclear RNA auxiliary factor 1.
   
 0.998
srsf1
Serine and arginine rich splicing factor 1.
   
 0.994
SUGP1
SURP and G-patch domain containing 1.
    
 0.980
ENSCHAP00000010176
Splicing factor 1.
   
 
 0.980
LOC105904970
THO complex subunit 4-like.
   
 0.974
prpf19
pre-mRNA processing factor 19.
   
 0.960
sf3b1
Splicing factor 3b subunit 1.
 
 
 
 0.959
ENSCHAP00000033049
Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.
   
 0.957
ENSCHAP00000043344
annotation not available
   
 0.957
ENSCHAP00000012949
Splicing factor 3b, subunit 4.
   
 
 0.955
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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