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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004955Cornichon family AMPA receptor auxiliary protein 3. (158 aa)    
Predicted Functional Partners:
LOC105894622
Voltage-dependent calcium channel gamma-4 subunit-like.
   
 0.940
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
    
 0.935
ENSCHAP00000061965
Glutamate receptor, ionotropic, AMPA 2a.
    
 0.935
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.838
ENSCHAP00000025907
Glutamate receptor, ionotropic, AMPA 3a.
   
 0.823
LOC105912015
Glutamate receptor 3-like.
   
 0.823
ENSCHAP00000002373
Glutamate receptor, ionotropic, AMPA 1b.
    
 0.822
LOC105905528
Glutamate receptor 4-like.
    
 0.822
ENSCHAP00000037129
Glutamate receptor, ionotropic, AMPA 1a.
    
 0.822
gria4
Glutamate ionotropic receptor AMPA type subunit 4.
    
 0.822
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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