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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004965Si:dkey-25o16.4. (1640 aa)    
Predicted Functional Partners:
gosr1
Golgi SNAP receptor complex member 1.
   
 0.848
uso1
USO1 vesicle transport factor.
   
 0.823
ENSCHAP00000012638
Golgin A2.
   
 
 0.795
ENSCHAP00000024071
Syntaxin 5A.
    
 0.766
LOC105900350
Syntaxin-5-like.
    
 0.766
ENSCHAP00000012439
Zgc:101810.
   
 0.754
LOC105901564
Actin-related protein 2-B.
   
 0.754
cenpf
Centromere protein F.
   
 
 0.740
LOC105900701
Actin-related protein 3.
   
 0.732
actr3b
Actin related protein 3B.
   
 0.732
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.