STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000004969Ubiquitin specific peptidase 18. (338 aa)    
Predicted Functional Partners:
ENSCHAP00000002045
DEXH (Asp-Glu-X-His) box polypeptide 58.
   
 
 0.963
ENSCHAP00000020799
Radical S-adenosyl methionine domain containing 2.
   
  
 0.946
ENSCHAP00000037051
Interferon regulatory factor 7.
   
 0.935
ENSCHAP00000030857
annotation not available
    
 0.929
rps27a
Ribosomal protein S27a.
   
 0.928
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.911
ENSCHAP00000026379
annotation not available
   
 0.902
ENSCHAP00000026822
annotation not available
   
 0.902
ENSCHAP00000029334
annotation not available
   
 0.902
ENSCHAP00000014285
annotation not available
   
 
 0.897
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.