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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDAH1Dimethylarginine dimethylaminohydrolase 1. (282 aa)    
Predicted Functional Partners:
ENSCHAP00000024514
WRN RecQ like helicase.
   
 0.861
med6
Mediator complex subunit 6.
    
 0.851
med23
Mediator complex subunit 23.
     
 0.833
ENSCHAP00000048371
Mediator complex subunit 14.
     
 0.821
med22
Mediator complex subunit 22.
     
 0.808
med18
Mediator complex subunit 18.
     
 0.800
ccnc
Cyclin C.
     
 0.797
ASS1
Argininosuccinate synthase 1.
    
 0.794
sgpl1
Sphingosine-1-phosphate lyase 1.
    
 0.787
LOC105908582
Probable low-specificity L-threonine aldolase 2.
    
  0.783
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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