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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
riox1Ribosomal oxygenase 1. (543 aa)    
Predicted Functional Partners:
rpl8
Ribosomal protein L8.
    
 
 0.971
mrpl2
Mitochondrial ribosomal protein L2.
    
 
 0.678
ENSCHAP00000022111
annotation not available
      
 0.538
jmjd4
Jumonji domain containing 4.
      
 0.530
ENSCHAP00000048735
Hspb associated protein 1.
      
 0.530
ENSCHAP00000049480
PHD finger protein 19.
      
 0.516
LOC105892533
60S ribosomal protein L27a-like.
    
 
 0.506
RPL27A
Ribosomal protein L27a.
    
 
 0.506
usp7
Ubiquitin specific peptidase 7.
      
 0.445
riok1
RIO kinase 1.
      
 0.431
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.