STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005162Ubiquitin specific peptidase 11. (1010 aa)    
Predicted Functional Partners:
ENSCHAP00000014185
Ring finger protein 123.
   
 0.829
ENSCHAP00000030291
Ubiquitin B.
    
 0.769
ENSCHAP00000003536
Baculoviral IAP repeat containing 7.
    
 0.740
birc2
Baculoviral IAP repeat containing 2.
    
 0.740
usp7
Ubiquitin specific peptidase 7.
   
 0.739
pcna
Proliferating cell nuclear antigen.
   
  0.675
ENSCHAP00000030857
annotation not available
    
  0.673
mrps14
Mitochondrial ribosomal protein S14.
    
 0.669
usp10
Ubiquitin specific peptidase 10.
    
0.665
mrps9
Mitochondrial ribosomal protein S9.
   
 
 0.660
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.