STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tspan12Tetraspanin 12. (307 aa)    
Predicted Functional Partners:
ndp
Norrin cystine knot growth factor NDP.
    
 
 0.640
ENSCHAP00000050374
Frizzled class receptor 4.
   
 
 0.623
ENSCHAP00000016391
Macrophage stimulating 1 receptor b.
    
  0.599
ENSCHAP00000041906
Macrophage stimulating 1 receptor a.
    
  0.599
ENSCHAP00000053649
MET proto-oncogene, receptor tyrosine kinase.
    
  0.599
ENSCHAP00000000459
Zinc finger protein 408.
      
 0.532
ENSCHAP00000033114
ADAM metallopeptidase domain 10a.
    
 0.475
LGR5
Leucine rich repeat containing G protein-coupled receptor 5.
     
 0.462
lgr4
Leucine rich repeat containing G protein-coupled receptor 4.
     
 0.462
LOC105892433
Disintegrin and metalloproteinase domain-containing protein 10-like.
    
 0.443
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.