STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005198annotation not available (280 aa)    
Predicted Functional Partners:
prpf19
pre-mRNA processing factor 19.
    
 0.847
ENSCHAP00000024896
Nucleoporin 88.
    
 0.846
ENSCHAP00000049225
XPA binding protein 2.
    
 0.846
snw1
SNW domain containing 1.
    
 0.845
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
  
 0.843
ENSCHAP00000006895
annotation not available
    
 0.838
ENSCHAP00000037889
Nucleoporin 155.
   
 0.834
ENSCHAP00000014546
Nucleoporin 107.
   
 0.833
seh1l
SEH1 like nucleoporin.
    
 0.829
ENSCHAP00000032669
SYF2 pre-mRNA-splicing factor.
    
 0.823
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.