STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105891839Mitochondrial folate transporter/carrier-like. (321 aa)    
Predicted Functional Partners:
pum2
Pumilio RNA binding family member 2.
    
 
 0.535
ENSCHAP00000060015
Pumilio RNA-binding family member 1.
    
 
 0.535
rfk
Riboflavin kinase.
   
  
 0.532
gart
annotation not available
      
 0.523
gldc
Glycine decarboxylase.
      
 0.520
ENSCHAP00000028893
Coenzyme Q6 monooxygenase.
 
  
 
 0.485
slc25a26
Solute carrier family 25 member 26.
      
0.420
ENSCHAP00000001323
annotation not available
    
  0.416
ENSCHAP00000001496
annotation not available
    
  0.416
ENSCHAP00000001607
annotation not available
    
  0.416
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.