STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005268LIM and cysteine-rich domains 1. (348 aa)    
Predicted Functional Partners:
gata6
GATA binding protein 6.
    
 0.778
gmds
GDP-mannose 4,6-dehydratase.
   
 
  0.770
ENSCHAP00000003853
GATA binding protein 4.
    
 0.738
gata5
GATA binding protein 5.
    
 0.738
ENSCHAP00000046795
VANGL planar cell polarity protein 2.
    
 0.710
VANGL1
VANGL planar cell polarity protein 1.
    
 0.710
LOC105912219
GATA-binding factor 1-B-like.
    
 0.707
LOC105898893
Erythroid transcription factor-like.
    
 0.707
ENSCHAP00000001469
Dishevelled segment polarity protein 3a.
    
 0.589
DVL2
Dishevelled segment polarity protein 2.
    
 0.589
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.