STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105907875Carbonic anhydrase-related protein 10-like. (369 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.737
ENSCHAP00000038950
Ribosome biogenesis regulator 1 homolog.
   
 
 0.647
UTP18
UTP18 small subunit processome component.
   
  
 0.614
ENSCHAP00000035961
Peter pan homolog.
   
    0.601
rpl11
Ribosomal protein L11.
    
 
 0.598
ENSCHAP00000011215
Glutamate-rich WD repeat containing 1.
   
  
 0.595
nop2
NOP2 nucleolar protein.
   
   0.560
ENSCHAP00000050145
WD repeat domain 43.
   
    0.558
ENSCHAP00000008125
GTP binding protein 4.
   
  
 0.552
ENSCHAP00000051587
WD repeat domain 36.
   
    0.549
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.