STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005309annotation not available (1482 aa)    
Predicted Functional Partners:
LOC105901090
E3 ubiquitin-protein ligase DTX3L-like.
 
 
 
 0.877
ENSCHAP00000053119
Zgc:66440.
   
 
 0.788
ENSCHAP00000014285
annotation not available
   
 
 0.703
ENSCHAP00000062558
Interferon induced with helicase C domain 1.
   
 
 0.703
LOC105908656
Poly [ADP-ribose] polymerase 9-like.
  
 
0.611
ENSCHAP00000010605
Danio rerio ring finger protein 213a (rnf213a), mRNA.
  
 
 0.600
ENSCHAP00000032099
Danio rerio ring finger protein 213b (rnf213b), mRNA.
  
 
 0.600
hdac11
Histone deacetylase 11.
   
 0.560
ENSCHAP00000004969
Ubiquitin specific peptidase 18.
   
 
 0.550
aifm1
Apoptosis inducing factor mitochondria associated 1.
  
 0.546
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.