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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005325Signal transducing adaptor molecule (SH3 domain and ITAM motif) 1. (410 aa)    
Predicted Functional Partners:
ENSCHAP00000030291
Ubiquitin B.
    
 0.988
ENSCHAP00000000387
annotation not available
    
0.987
ENSCHAP00000016490
Intersectin 2b.
    
0.987
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 0.987
ENSCHAP00000035267
Intersectin 1 (SH3 domain protein).
    
0.987
ENSCHAP00000057857
Intersectin 2a.
    
0.987
rps27a
Ribosomal protein S27a.
   
 0.984
ENSCHAP00000020648
Zinc finger, FYVE domain containing 1.
   
 0.978
ENSCHAP00000032748
Protein tyrosine phosphatase, non-receptor type 23, b.
   
 0.978
LOC105909327
Zinc finger FYVE domain-containing protein 1-like.
   
 0.978
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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