STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005337annotation not available (120 aa)    
Predicted Functional Partners:
lum
Lumican.
   
  0.806
serpinh1
Serpin family H member 1.
    
 0.695
ENSCHAP00000036452
Serpin peptidase inhibitor, clade H (heat shock protein 47), member 1a.
    
 0.695
ENSCHAP00000007951
Prolyl 4-hydroxylase, beta polypeptide.
   
  0.683
ENSCHAP00000040789
annotation not available
   
 0.678
ENSCHAP00000021042
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
   
 0.660
ENSCHAP00000037330
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
   
 0.660
plod2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
 0.660
ppib
Peptidylprolyl isomerase B.
     
 0.658
p4ha3
Prolyl 4-hydroxylase subunit alpha 3.
    
 0.648
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.