STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005340Proteasome 20S subunit beta 3. (187 aa)    
Predicted Functional Partners:
psmb1
Proteasome 20S subunit beta 1.
   
0.999
ENSCHAP00000002433
Proteasome 20S subunit beta 4.
   
 0.999
psmc6
Proteasome 26S subunit, ATPase 6.
  
 0.999
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.999
ENSCHAP00000016300
annotation not available
   
 0.999
psmb2
Proteasome 20S subunit beta 2.
   
 0.999
psma3
Proteasome 20S subunit alpha 3.
   
 0.999
ENSCHAP00000035188
Proteasome 26S subunit, ATPase 4.
  
 0.999
LOC105909715
Proteasome subunit alpha type-6-like.
   
 0.999
psma5
Proteasome 20S subunit alpha 5.
   
 0.999
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.