STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005345annotation not available (1148 aa)    
Predicted Functional Partners:
ENSCHAP00000043128
High mobility group 20A.
   
 
 0.872
ENSCHAP00000030682
Bromodomain containing 1b.
   
 
0.830
brpf1
Bromodomain and PHD finger containing 1.
   
 
0.830
ENSCHAP00000029495
Bromodomain and PHD finger containing, 3a.
   
 
0.814
ENSCHAP00000039505
Bromodomain and PHD finger containing, 3b.
   
 
0.814
ENSCHAP00000002296
annotation not available
    
   0.702
LOC105891258
Histone H3.
    
   0.702
LOC105888649
Histone H3.
    
   0.702
LOC105891627
Histone H3.
    
   0.702
ENSCHAP00000019434
annotation not available
    
   0.702
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.