STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894475Platelet-activating factor acetylhydrolase-like. (441 aa)    
Predicted Functional Partners:
LOC105901460
Apolipoprotein Eb-like.
     
 0.938
LOC105891813
Serum paraoxonase/arylesterase 2-like.
     
 0.937
ENSCHAP00000031846
Lecithin-cholesterol acyltransferase.
     
 0.937
cetp
Cholesteryl ester transfer protein.
     
 0.927
pltp
Phospholipid transfer protein.
     
 0.926
LOC105896374
Apolipoprotein C-I-like.
   
 
 0.912
ENSCHAP00000005971
Lysophosphatidylcholine acyltransferase 2.
     
 0.911
pafah1b1
Platelet activating factor acetylhydrolase 1b regulatory subunit 1.
     
 0.901
pla2g4a
Phospholipase A2 group IVA.
     
 0.900
ENSCHAP00000014176
Phospholipase A2, group VI (cytosolic, calcium-independent).
     
 0.887
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.