STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005370tRNA methyltransferase O. (218 aa)    
Predicted Functional Partners:
ENSCHAP00000009497
Thymidylate synthetase.
    
  0.859
cmpk2
Cytidine/uridine monophosphate kinase 2.
    
  0.839
dtymk
Deoxythymidylate kinase.
    
  0.839
ENSCHAP00000011344
Triosephosphate isomerase 1b.
    
  0.825
LOC105892014
Triosephosphate isomerase A.
    
  0.825
dctd
dCMP deaminase.
  
 
  0.813
cep44
Centrosomal protein 44.
  
 
  0.813
ephx2
Epoxide hydrolase 2.
  
 
  0.644
hdhd3
Haloacid dehalogenase like hydrolase domain containing 3.
  
 
  0.613
ENSCHAP00000049610
annotation not available
    
  0.610
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.