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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005402Protein kinase C, eta, b. (714 aa)    
Predicted Functional Partners:
braf
B-Raf proto-oncogene, serine/threonine kinase.
    
0.882
araf
A-Raf proto-oncogene, serine/threonine kinase.
    
0.881
pdpk1
3-phosphoinositide dependent protein kinase 1.
    
0.867
raf1
Raf-1 proto-oncogene, serine/threonine kinase.
    
0.848
LOC105900156
RAF proto-oncogene serine/threonine-protein kinase-like.
    
0.848
mras
Muscle RAS oncogene homolog.
   
 0.792
ENSCHAP00000060388
Caspase recruitment domain family, member 11.
   
 0.781
ENSCHAP00000028374
annotation not available
    
 0.770
vdac1
Voltage dependent anion channel 1.
    
 0.759
ENSCHAP00000019715
Guanine nucleotide binding protein (G protein), beta polypeptide 3a.
   
 0.736
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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