STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbc1d8bTBC1 domain family member 8B. (1164 aa)    
Predicted Functional Partners:
ENSCHAP00000060131
Cyclin G associated kinase.
   
 
  0.981
ENSCHAP00000037904
Sortilin 1b.
    
  0.670
ENSCHAP00000012175
DnaJ (Hsp40) homolog, subfamily C, member 6.
   
 
  0.667
ap2b1
Adaptor related protein complex 2 subunit beta 1.
   
 
  0.667
yipf6
Yip1 domain family member 6.
   
 
  0.652
snapin
SNAP associated protein.
     
 0.646
ENSCHAP00000031837
Insulin-like growth factor 2 receptor.
   
 
  0.645
ap4b1
Adaptor related protein complex 4 subunit beta 1.
   
 
  0.619
ENSCHAP00000005612
Huntingtin interacting protein 1.
   
 
  0.593
ENSCHAP00000042646
annotation not available
   
 
  0.593
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.