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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105911632Sideroflexin-1-like. (322 aa)    
Predicted Functional Partners:
runx1t1
RUNX1 partner transcriptional co-repressor 1.
   
    0.707
ENSCHAP00000048413
CBFA2/RUNX1 partner transcriptional co-repressor 3.
   
    0.707
rab11a
RAB11A, member RAS oncogene family.
    
 0.685
LOC105891875
Ras-related protein Rab-11A-like.
    
 0.685
LOC105889693
Ras-related protein Rab-11B-like.
    
 0.685
LOC105900968
Ras-related protein Rab-11B-like.
    
 0.685
ENSCHAP00000016303
RAB25, member RAS oncogene family b.
    
 0.642
ENSCHAP00000041626
annotation not available
    
 0.642
ENSCHAP00000041664
RAB25, member RAS oncogene family a.
    
 0.642
rabl2a
RAB, member of RAS oncogene family like 2A.
    
 0.618
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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