RBM20 protein (Clupea harengus) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

RBM20

RNA binding motif protein 20. (1149 aa)

Predicted Functional Partners:

sf3b3

0.488

rps27a

0.477

ENSCHAP00000055612

0.476

mysm1

0.476

ENSCHAP00000012123

0.461

ENSCHAP00000030857

0.461

ENSCHAP00000049028

0.461

supt3h

0.456

taf10

0.449

ENSCHAP00000030227

0.449

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000012123	ENSCHAP00000030227	ENSCHAP00000012123	ENSCHAP00000030227	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Shroom family member 3.	0.557
ENSCHAP00000012123	ENSCHAP00000030857	ENSCHAP00000012123	ENSCHAP00000030857	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	annotation not available	0.814
ENSCHAP00000012123	ENSCHAP00000049028	ENSCHAP00000012123	ENSCHAP00000049028	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Transformation/transcription domain-associated protein.	0.999
ENSCHAP00000012123	RBM20	ENSCHAP00000012123	ENSCHAP00000005490	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	RNA binding motif protein 20.	0.461
ENSCHAP00000012123	rps27a	ENSCHAP00000012123	ENSCHAP00000051395	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Ribosomal protein S27a.	0.834
ENSCHAP00000012123	sf3b3	ENSCHAP00000012123	ENSCHAP00000021461	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	Splicing factor 3b subunit 3.	0.986
ENSCHAP00000012123	supt3h	ENSCHAP00000012123	ENSCHAP00000015263	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	SPT3 homolog, SAGA and STAGA complex component.	0.999
ENSCHAP00000012123	taf10	ENSCHAP00000012123	ENSCHAP00000003532	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	TATA-box binding protein associated factor 10.	0.999
ENSCHAP00000030227	ENSCHAP00000012123	ENSCHAP00000030227	ENSCHAP00000012123	Shroom family member 3.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.557
ENSCHAP00000030227	ENSCHAP00000030857	ENSCHAP00000030227	ENSCHAP00000030857	Shroom family member 3.	annotation not available	0.407
ENSCHAP00000030227	RBM20	ENSCHAP00000030227	ENSCHAP00000005490	Shroom family member 3.	RNA binding motif protein 20.	0.449
ENSCHAP00000030227	mysm1	ENSCHAP00000030227	ENSCHAP00000061173	Shroom family member 3.	Myb like, SWIRM and MPN domains 1.	0.508
ENSCHAP00000030227	rps27a	ENSCHAP00000030227	ENSCHAP00000051395	Shroom family member 3.	Ribosomal protein S27a.	0.540
ENSCHAP00000030227	taf10	ENSCHAP00000030227	ENSCHAP00000003532	Shroom family member 3.	TATA-box binding protein associated factor 10.	0.541
ENSCHAP00000030857	ENSCHAP00000012123	ENSCHAP00000030857	ENSCHAP00000012123	annotation not available	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.814
ENSCHAP00000030857	ENSCHAP00000030227	ENSCHAP00000030857	ENSCHAP00000030227	annotation not available	Shroom family member 3.	0.407
ENSCHAP00000030857	ENSCHAP00000049028	ENSCHAP00000030857	ENSCHAP00000049028	annotation not available	Transformation/transcription domain-associated protein.	0.912
ENSCHAP00000030857	RBM20	ENSCHAP00000030857	ENSCHAP00000005490	annotation not available	RNA binding motif protein 20.	0.461
ENSCHAP00000030857	mysm1	ENSCHAP00000030857	ENSCHAP00000061173	annotation not available	Myb like, SWIRM and MPN domains 1.	0.996
ENSCHAP00000030857	rps27a	ENSCHAP00000030857	ENSCHAP00000051395	annotation not available	Ribosomal protein S27a.	0.999