STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005497Protein tyrosine phosphatase 4A3b. (173 aa)    
Predicted Functional Partners:
rabggtb
Rab geranylgeranyltransferase subunit beta.
    
 0.759
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.734
taf6l
TATA-box binding protein associated factor 6 like.
     
 0.632
taf6
TATA-box binding protein associated factor 6.
     
 0.632
ENY2
ENY2 transcription and export complex 2 subunit.
   
 
  0.603
LOC105908906
Transcription and mRNA export factor ENY2.
   
 
  0.603
LOC105893872
Metal transporter CNNM4-like.
    
 
 0.590
ENSCHAP00000029116
Cyclin and CBS domain divalent metal cation transport mediator 2b.
    
 
 0.590
CNNM3
Cyclin and CBS domain divalent metal cation transport mediator 3.
    
 
 0.590
ENSCHAP00000029628
Cyclin and CBS domain divalent metal cation transport mediator 4a.
    
 
 0.590
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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