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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARHGDIARho GDP dissociation inhibitor alpha. (254 aa)    
Predicted Functional Partners:
ENSCHAP00000015988
Nerve growth factor receptor a (TNFR superfamily, member 16).
    
 0.954
ENSCHAP00000018026
annotation not available
   
 0.894
LOC105906845
Cell division control protein 42 homolog.
   
 0.894
LOC105892187
Ras-related C3 botulinum toxin substrate 2.
   
 0.878
LOC105899959
Ras-related C3 botulinum toxin substrate 3.
   
 0.878
rac3
Rac family small GTPase 3.
   
 0.878
LOC105893231
Rho-related GTP-binding protein RhoG-like.
   
 0.850
LOC105905854
Rho-related GTP-binding protein RhoG-like.
   
 0.850
rhoj
Ras homolog family member J.
   
 0.827
LOC105900041
Rho-related GTP-binding protein RhoQ-like.
   
 0.827
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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