STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005644Four-jointed box kinase 1. (395 aa)    
Predicted Functional Partners:
ENSCHAP00000037650
FAT atypical cadherin 3a.
   
 0.954
ENSCHAP00000028579
annotation not available
   
 0.949
fat1
FAT atypical cadherin 1.
   
 0.813
ENSCHAP00000040248
FAT atypical cadherin 1b.
   
 0.813
fat2
FAT atypical cadherin 2.
   
 0.813
FAT4
FAT atypical cadherin 4.
   
 0.802
ENSCHAP00000037997
Dachsous cadherin-related 1b.
   
 0.778
LOC105909256
Protocadherin-16-like.
   
 0.740
ENSCHAP00000040293
annotation not available
   
 0.740
ENSCHAP00000008318
Chromosome 5 open reading frame 22.
   
 0.719
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.