STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005652Danio rerio selenoprotein U 1a (selenou1a), transcript variant 2, mRNA. (192 aa)    
Predicted Functional Partners:
ENSCHAP00000048853
Microsomal glutathione S-transferase 1.1.
     
 0.522
ptges
Prostaglandin E synthase.
     
 0.522
ENSCHAP00000048178
Si:ch211-131k2.3.
   
 
 0.514
ENSCHAP00000043245
Glutathione S-transferase mu, tandem duplicate 1.
   
 
 0.490
ENSCHAP00000004516
annotation not available
     
 0.489
GSTP1
Glutathione S-transferase pi 1.
     
 0.489
LOC105911621
Glutathione S-transferase 3-like.
     
 0.489
trip12
Thyroid hormone receptor interactor 12.
      
 0.424
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.