STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005662Family with sequence similarity 98 member B. (372 aa)    
Predicted Functional Partners:
ENSCHAP00000003684
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
    
 0.994
rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
    
 0.994
rtraf
RNA transcription, translation and transport factor.
    
 0.994
LOC105893287
Chromosome unknown open reading frame, human C2orf49.
    
 0.993
ENSCHAP00000038277
Zinc finger and BTB domain containing 8 opposite strand.
    
 0.952
ENSCHAP00000062589
Family with sequence similarity 98 member A.
  
 
 
0.932
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.864
ENSCHAP00000047368
Lysine (K)-specific demethylase 6A.
    
 0.793
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.764
ENSCHAP00000007184
Lysine (K)-specific demethylase 6B, b.
    
 0.694
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.