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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000005955Lysine (K)-specific demethylase 5Bb. (1469 aa)    
Predicted Functional Partners:
atp5f1c
ATP synthase F1 subunit gamma.
  
 0.985
atp5f1d
ATP synthase F1 subunit delta.
  
 0.985
atp5f1a
methyl-CpG-binding domain protein 2-like.
  
 0.985
atp5po
ATP synthase peripheral stalk subunit OSCP.
  
 0.985
atp5pd
ATP synthase peripheral stalk subunit d.
   
 0.959
ENSCHAP00000043428
ATP synthase peripheral stalk-membrane subunit b.
   
 0.955
LOC105908588
V-type proton ATPase 16 kDa proteolipid subunit-like.
  
 0.916
ATP5MC2
ATP synthase membrane subunit c locus 2.
  
 0.916
LOC105912613
ATP synthase F(0) complex subunit C2, mitochondrial-like.
  
 0.916
atp5mc1
ATP synthase membrane subunit c locus 1.
  
 0.916
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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