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The next version of STRING is ready for use in your analyses: updated networks across STRING newly available directed regulatory networks a new typed view showing functional, physical, and regulatory edges in one network new clustering options and cluster-based layouts … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006066Phosphatidylinositol 3-kinase, catalytic subunit type 3. (901 aa)    
Predicted Functional Partners:
ENSCHAP00000017699
Phosphoinositide-3-kinase, regulatory subunit 4.
   
 0.999
becn1
Beclin 1.
    
 0.999
atg14
Autophagy related 14.
    
 0.999
ENSCHAP00000037967
UV radiation resistance associated gene.
    
 0.999
nrbf2
Nuclear receptor binding factor 2.
    
 0.998
ENSCHAP00000010379
Unc-51 like autophagy activating kinase 1a.
    
 0.983
ENSCHAP00000020142
Unc-51 like autophagy activating kinase 1.
    
 0.983
ENSCHAP00000030416
Unc-51 like autophagy activating kinase 2.
    
 0.983
LOC105893383
Ras-related protein Rab-5B-like.
    
 0.970
rab5b
RAB5B, member RAS oncogene family.
    
 0.969
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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