STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006159annotation not available (97 aa)    
Predicted Functional Partners:
lemd3
LEM domain containing 3.
   
 0.689
lmnb2
Lamin B2.
   
 0.665
ENSCHAP00000007028
annotation not available
   
 0.646
ENSCHAP00000015502
Lamin L3.
   
 0.646
ENSCHAP00000016005
Lamin A.
   
 0.646
lmnb1
Lamin B1.
   
 0.646
rbm39
RNA binding motif protein 39.
   
 0.635
LOC105906838
RNA-binding protein 39-like.
   
 0.635
ENSCHAP00000017839
VRK serine/threonine kinase 2.
    
 0.628
vrk1
VRK serine/threonine kinase 1.
    
 0.628
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.