STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006201Si:ch211-120g10.1. (372 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
  0.513
ENSCHAP00000020209
annotation not available
  
 
  0.490
ENSCHAP00000033153
annotation not available
  
 
  0.481
ENSCHAP00000009147
annotation not available
  
 
  0.477
rtn4rl2
Reticulon 4 receptor like 2.
    
 
 0.472
ENSCHAP00000006071
annotation not available
  
 
  0.465
ENSCHAP00000017481
annotation not available
  
 
  0.465
ENSCHAP00000002013
annotation not available
  
 
  0.461
ENSCHAP00000006147
annotation not available
  
 
  0.461
ENSCHAP00000014203
annotation not available
  
 
  0.459
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.