ENSCHAP00000006236 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000006236

Carnitine O-octanoyltransferase. (615 aa)

Predicted Functional Partners:

LOC105895092

0.834

ENSCHAP00000051341

0.834

DBI

0.772

ENSCHAP00000004539

0.767

ENSCHAP00000041851

0.739

pex12

0.713

pex13

0.701

ENSCHAP00000019596

0.693

ENSCHAP00000035232

0.693

ENSCHAP00000056517

0.693

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DBI	ENSCHAP00000004539	ENSCHAP00000056367	ENSCHAP00000004539	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 10.	0.574
DBI	ENSCHAP00000006236	ENSCHAP00000056367	ENSCHAP00000006236	Diazepam binding inhibitor, acyl-CoA binding protein.	Carnitine O-octanoyltransferase.	0.772
DBI	ENSCHAP00000019596	ENSCHAP00000056367	ENSCHAP00000019596	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 5.	0.503
DBI	ENSCHAP00000035232	ENSCHAP00000056367	ENSCHAP00000035232	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 5-like b.	0.503
DBI	ENSCHAP00000051341	ENSCHAP00000056367	ENSCHAP00000051341	Diazepam binding inhibitor, acyl-CoA binding protein.	Sterol carrier protein 2a.	0.658
DBI	ENSCHAP00000056517	ENSCHAP00000056367	ENSCHAP00000056517	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 5-like a.	0.503
DBI	LOC105895092	ENSCHAP00000056367	ENSCHAP00000049722	Diazepam binding inhibitor, acyl-CoA binding protein.	Non-specific lipid-transfer protein-like.	0.633
DBI	pex12	ENSCHAP00000056367	ENSCHAP00000018946	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 12.	0.671
DBI	pex13	ENSCHAP00000056367	ENSCHAP00000005597	Diazepam binding inhibitor, acyl-CoA binding protein.	Peroxisomal biogenesis factor 13.	0.709
ENSCHAP00000004539	DBI	ENSCHAP00000004539	ENSCHAP00000056367	Peroxisomal biogenesis factor 10.	Diazepam binding inhibitor, acyl-CoA binding protein.	0.574
ENSCHAP00000004539	ENSCHAP00000006236	ENSCHAP00000004539	ENSCHAP00000006236	Peroxisomal biogenesis factor 10.	Carnitine O-octanoyltransferase.	0.767
ENSCHAP00000004539	ENSCHAP00000019596	ENSCHAP00000004539	ENSCHAP00000019596	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 5.	0.941
ENSCHAP00000004539	ENSCHAP00000035232	ENSCHAP00000004539	ENSCHAP00000035232	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 5-like b.	0.930
ENSCHAP00000004539	ENSCHAP00000041851	ENSCHAP00000004539	ENSCHAP00000041851	Peroxisomal biogenesis factor 10.	Hydroxysteroid (17-beta) dehydrogenase 4.	0.693
ENSCHAP00000004539	ENSCHAP00000051341	ENSCHAP00000004539	ENSCHAP00000051341	Peroxisomal biogenesis factor 10.	Sterol carrier protein 2a.	0.988
ENSCHAP00000004539	ENSCHAP00000056517	ENSCHAP00000004539	ENSCHAP00000056517	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 5-like a.	0.930
ENSCHAP00000004539	LOC105895092	ENSCHAP00000004539	ENSCHAP00000049722	Peroxisomal biogenesis factor 10.	Non-specific lipid-transfer protein-like.	0.988
ENSCHAP00000004539	pex12	ENSCHAP00000004539	ENSCHAP00000018946	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 12.	0.999
ENSCHAP00000004539	pex13	ENSCHAP00000004539	ENSCHAP00000005597	Peroxisomal biogenesis factor 10.	Peroxisomal biogenesis factor 13.	0.992
ENSCHAP00000006236	DBI	ENSCHAP00000006236	ENSCHAP00000056367	Carnitine O-octanoyltransferase.	Diazepam binding inhibitor, acyl-CoA binding protein.	0.772