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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B3GAT1Beta-1,3-glucuronyltransferase 1. (319 aa)    
Predicted Functional Partners:
chst10
Carbohydrate sulfotransferase 10.
     
 0.855
ENSCHAP00000034799
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3.
 
 
 
 0.837
LOC105891829
Beta-1,4-galactosyltransferase 3-like.
 
 
 
 0.837
ENSCHAP00000048888
UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2.
 
 
 
 0.837
b3gat2
Beta-1,3-glucuronyltransferase 2.
  
  
 
0.829
b3galt6
Beta-1,3-galactosyltransferase 6.
   
 
 0.735
b3gat3
Beta-1,3-glucuronyltransferase 3.
  
  
 
0.647
ENSCHAP00000003796
beta-1,4-N-acetyl-galactosaminyl transferase 1a.
   
 
 0.608
ENSCHAP00000007480
Chondroitin sulfate N-acetylgalactosaminyltransferase 1a.
     
 0.577
ENSCHAP00000038327
Chondroitin sulfate N-acetylgalactosaminyltransferase 1b.
     
 0.577
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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