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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006469Glutamate receptor, ionotropic, delta 2. (1017 aa)    
Predicted Functional Partners:
ENSCHAP00000027640
annotation not available
   
 0.802
vwc2
Von Willebrand factor C domain containing 2.
   
 
  0.766
LOC105891600
Glutamate receptor ionotropic, NMDA 1-like.
   
0.676
ENSCHAP00000056897
Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.
   
0.676
ENSCHAP00000015564
5-hydroxytryptamine (serotonin) receptor 3B.
    
  0.673
ENSCHAP00000048689
5-hydroxytryptamine (serotonin) receptor 3A.
    
  0.673
ENSCHAP00000029861
Porcupine O-acyltransferase.
    
  0.669
LOC105898967
Protein-serine O-palmitoleoyltransferase porcupine-like.
    
  0.669
ENSCHAP00000043435
Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Ba.
   
0.664
ENSCHAP00000056235
Glutamate receptor, ionotropic, N-methyl-D-aspartate 3Bb.
   
0.664
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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