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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006581Carnitine O-acetyltransferase a. (631 aa)    
Predicted Functional Partners:
LOC105895092
Non-specific lipid-transfer protein-like.
   
 0.870
ENSCHAP00000051341
Sterol carrier protein 2a.
   
 0.870
ENSCHAP00000031821
Carnitine O-acetyltransferase b.
  
  
 
0.851
HTD2
Hydroxyacyl-thioester dehydratase type 2.
   
 0.838
ENSCHAP00000047629
Ribonuclease P/MRP 14 subunit.
   
 0.838
hsdl2
Hydroxysteroid dehydrogenase like 2.
   
 0.834
cpt2
Carnitine palmitoyltransferase 2.
  
0.798
ENSCHAP00000027671
Zgc:154046.
  
  
 
0.773
ENSCHAP00000042236
Peroxisomal biogenesis factor 14.
    
 0.741
ENSCHAP00000034591
acyl-CoA oxidase 1, palmitoyl.
   
 0.720
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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