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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wacWW domain containing adaptor with coiled-coil. (556 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.982
snrpe
Small nuclear ribonucleoprotein polypeptide E.
    
 0.977
ENSCHAP00000035894
Splicing factor 3b, subunit 2.
   
 0.977
sf3b3
Splicing factor 3b subunit 3.
    
 0.976
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 0.976
snrpg
Small nuclear ribonucleoprotein polypeptide G.
    
 0.974
snrnp70
Small nuclear ribonucleoprotein U1 subunit 70.
    
 0.972
snrnp35
Small nuclear ribonucleoprotein U11/U12 subunit 35.
    
 0.972
rbm25
RNA binding motif protein 25.
   
 0.971
LOC105896931
RNA-binding protein 25-like.
   
 0.971
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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