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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006645galactose-3-O-sulfotransferase 1a. (401 aa)    
Predicted Functional Partners:
ugt8
UDP glycosyltransferase 8.
   
 
 0.875
LOC105899436
Galactocerebrosidase-like.
     
 0.872
ENSCHAP00000043860
Galactosylceramidase b.
     
 0.872
gal3st4
galactose-3-O-sulfotransferase 4.
  
  
 
0.855
ENSCHAP00000058840
annotation not available
  
  
 
0.855
UGT3A2
UDP glycosyltransferase family 3 member A2.
   
 
 0.854
ENSCHAP00000014913
galactose-3-O-sulfotransferase 1b.
  
  
 
0.851
ENSCHAP00000041636
Galactosidase, alpha.
     
 0.849
gal3st3
galactose-3-O-sulfotransferase 3.
  
  
 
0.771
ENSCHAP00000036212
annotation not available
  
  
 
0.769
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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