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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006689Family with sequence similarity 113. (432 aa)    
Predicted Functional Partners:
ENSCHAP00000033894
HEPACAM family member 2.
      
 0.543
ENSCHAP00000031638
SLX4 interacting protein.
      
 0.541
ENSCHAP00000048002
Sorting nexin 13.
      
 0.532
ENSCHAP00000029989
annotation not available
      
 0.520
ENSCHAP00000048679
Ribonuclease P/MRP 25 subunit-like.
      
 0.519
rer1
Retention in endoplasmic reticulum sorting receptor 1.
      
 0.516
ENSCHAP00000014840
Vacuolar protein sorting 16 homolog.
   
  
 0.462
ENSCHAP00000036613
VPS50 EARP/GARPII complex subunit.
      
 0.444
RNF24
Ring finger protein 24.
      
 0.438
ENSCHAP00000015226
Protein tyrosine phosphatase receptor type A.
      
 0.432
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.