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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBL5Ubiquitin like 5. (73 aa)    
Predicted Functional Partners:
ENSCHAP00000015367
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
    
 0.995
prpf38a
pre-mRNA processing factor 38A.
    
 0.990
mfap1
Microfibril associated protein 1.
    
 0.989
prpf8
pre-mRNA processing factor 8.
    
 
 0.987
zmat2
Zinc finger matrin-type 2.
    
 0.968
cdc40
Cell division cycle 40.
    
 0.958
wbp11
WW domain binding protein 11.
    
  0.957
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
   0.949
lsm8
LSM8 homolog, U6 small nuclear RNA associated.
   
  0.947
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 
 0.944
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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