STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000006819Calpain 8. (676 aa)    
Predicted Functional Partners:
tln2
Talin 2.
    
 0.855
ENSCHAP00000037603
Talin 1.
    
 0.855
ENSCHAP00000061257
Calpastatin.
   
 0.834
ENSCHAP00000030296
BCL2 associated X, apoptosis regulator a.
   
 
  0.827
LOC105889048
Apoptosis regulator BAX-like.
   
 
  0.824
LOC105901516
Calpain small subunit 1-like.
   
0.739
LOC105909712
Calpain small subunit 1-like.
   
0.739
ENSCHAP00000004413
annotation not available
  
  
 
0.705
ENSCHAP00000017104
annotation not available
  
  
 
0.703
ENSCHAP00000016490
Intersectin 2b.
   
 
  0.656
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.