LOC105892961 protein (Clupea harengus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC105892961

Alpha-1-antitrypsin homolog. (439 aa)

Predicted Functional Partners:

vtn

0.725

LOC105896257

0.725

ENSCHAP00000035123

0.710

serpine1

0.690

ENSCHAP00000018193

0.680

ENSCHAP00000011386

0.617

HGFAC

0.613

lrp6

0.571

lrp5

0.571

ENSCHAP00000005745

0.550

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000005745	ENSCHAP00000011386	ENSCHAP00000005745	ENSCHAP00000011386	Coagulation factor VII, like.	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	0.659
ENSCHAP00000005745	ENSCHAP00000018193	ENSCHAP00000005745	ENSCHAP00000018193	Coagulation factor VII, like.	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	0.878
ENSCHAP00000005745	ENSCHAP00000035123	ENSCHAP00000005745	ENSCHAP00000035123	Coagulation factor VII, like.	Protein C (inactivator of coagulation factors Va and VIIIa), a.	0.692
ENSCHAP00000005745	HGFAC	ENSCHAP00000005745	ENSCHAP00000024970	Coagulation factor VII, like.	HGF activator.	0.566
ENSCHAP00000005745	LOC105892961	ENSCHAP00000005745	ENSCHAP00000006879	Coagulation factor VII, like.	Alpha-1-antitrypsin homolog.	0.550
ENSCHAP00000011386	ENSCHAP00000005745	ENSCHAP00000011386	ENSCHAP00000005745	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Coagulation factor VII, like.	0.659
ENSCHAP00000011386	ENSCHAP00000018193	ENSCHAP00000011386	ENSCHAP00000018193	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	0.890
ENSCHAP00000011386	ENSCHAP00000035123	ENSCHAP00000011386	ENSCHAP00000035123	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Protein C (inactivator of coagulation factors Va and VIIIa), a.	0.818
ENSCHAP00000011386	HGFAC	ENSCHAP00000011386	ENSCHAP00000024970	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	HGF activator.	0.695
ENSCHAP00000011386	LOC105892961	ENSCHAP00000011386	ENSCHAP00000006879	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Alpha-1-antitrypsin homolog.	0.617
ENSCHAP00000011386	LOC105896257	ENSCHAP00000011386	ENSCHAP00000038772	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Vitronectin-like.	0.781
ENSCHAP00000011386	vtn	ENSCHAP00000011386	ENSCHAP00000030815	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	Vitronectin.	0.781
ENSCHAP00000018193	ENSCHAP00000005745	ENSCHAP00000018193	ENSCHAP00000005745	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Coagulation factor VII, like.	0.878
ENSCHAP00000018193	ENSCHAP00000011386	ENSCHAP00000018193	ENSCHAP00000011386	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Serpin peptidase inhibitor, clade D (heparin cofactor), member 1.	0.890
ENSCHAP00000018193	ENSCHAP00000035123	ENSCHAP00000018193	ENSCHAP00000035123	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Protein C (inactivator of coagulation factors Va and VIIIa), a.	0.921
ENSCHAP00000018193	HGFAC	ENSCHAP00000018193	ENSCHAP00000024970	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	HGF activator.	0.954
ENSCHAP00000018193	LOC105892961	ENSCHAP00000018193	ENSCHAP00000006879	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Alpha-1-antitrypsin homolog.	0.680
ENSCHAP00000018193	LOC105896257	ENSCHAP00000018193	ENSCHAP00000038772	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Vitronectin-like.	0.816
ENSCHAP00000018193	serpine1	ENSCHAP00000018193	ENSCHAP00000007423	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Serpin family E member 1.	0.614
ENSCHAP00000018193	vtn	ENSCHAP00000018193	ENSCHAP00000030815	Serpin peptidase inhibitor, clade C (antithrombin), member 1.	Vitronectin.	0.816